Q04P78 has 685 amino acids
Query: ABC_transp_aux [M=266]
Accession: PF09822.13
Description: ABC-type uncharacterized transport system
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-21 62.9 0.4 4.6e-21 61.5 0.4 1.7 1 Q04P78
Domain annotation for each sequence (and alignments):
>> Q04P78
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 61.5 0.4 4.6e-21 4.6e-21 2 234 .. 173 412 .. 172 432 .. 0.82
Alignments for each domain:
== domain 1 score: 61.5 bits; conditional E-value: 4.6e-21
ABC_transp_aux 2 lDlTedkrytLseatkellksleepvtitvylsgdl.........lpaelkrlqkevrelLeeyaaysngkikvefidpeeeseeeeeaeallgi 87
+Dl+++++y+ s++++++lk+++++v++ +++ + l +l+r++ +++ +L+++++ s+ ++k +fi+ + e + ae
Q04P78 173 FDLSSKGQYSFSPTAVKILKNVDKEVEVIAFYPRPLenspssdkaNSFSLRRIRPDLEIYLDQLKSLSP-QFKTRFINADVEL--DDLAEF---- 260
8*******************************99999999999886668999***************99.*********8654..333333.... PP
ABC_transp_aux 88 qpteieveengk.ss.qervypgavisygdkeevipllknnseenlEyeltsaikkltkkekpkigvltghgelsds.......seladlleels 173
+ ng+ +++ + +y +++ i ++++ e lE ++++a+ ++t++e ++i++ + +ge+ +s +++ l ++ls
Q04P78 261 -----GQVSNGTiLFrTKKPFAESGKQYAEQRLSI--REKSDLEDLERKIVQAVVNITTEE-KNIYFTQSNGERFSSifqnlpnEKIGILSNSLS 347
.....222333323323555444444455555555..55566889***************9.***********9999******866677779999 PP
ABC_transp_aux 174 e.nyeveevdldseae..lpeevdvlviakptkalseeekyaldqflmn.Ggkllvlldpvavel 234
n++v+ + ++++ +pe++dvl+ia+pt a+s+e++ a +f+++ gk++v +dp e+
Q04P78 348 FlNFKVKGLGIAEGWPsrIPENTDVLIIAGPTVAFSKEAQTATLDFIEKkKGKIFVTIDPKGTEN 412
9**********99887889****************************85279*******987666 PP
Or compare Q04P78 to CDD or PaperBLAST