PaperBLAST – Find papers about a protein or its homologs

 

Align Q0D9B8 to PF14309 (DUF4378)

Q0D9B8 has 931 amino acids

Query:       DUF4378  [M=166]
Accession:   PF14309.10
Description: Domain of unknown function (DUF4378)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-26   77.6   0.1    7.6e-26   77.6   0.1    3.4  3  Q0D9B8    


Domain annotation for each sequence (and alignments):
>> Q0D9B8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.025     0.025      84     116 ..     173     205 ..     158     239 .. 0.73
   2 ?    0.4   1.7     0.041     0.041      94     121 ..     364     391 ..     293     438 .. 0.59
   3 !   77.6   0.1   7.6e-26   7.6e-26       2     165 ..     756     917 ..     755     918 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.025
  DUF4378  84 yppskvssassrrrpkklsgeelleevwseirs 116
              ++  +++  ++r r++++++++  ee+ ++ir+
   Q0D9B8 173 DYTYRHCLKKMRPRRSRSRQHHPQEELLEKIRE 205
              444556667777788888888999999999986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.041
  DUF4378  94 srrrpkklsgeelleevwseirswlspe 121
              s++ +++ ++ee leev +++++ l+ +
   Q0D9B8 364 SSKVKREGNMEEFLEEVKERLKKELKLK 391
              3333444566777777777777522222 PP

  == domain 3  score: 77.6 bits;  conditional E-value: 7.6e-26
  DUF4378   2 leYvrdiLeasglllkd......sdellsrwhsses...pldpslfeeleekkgsaseeetresrserklLFDlvneiLveilelfkrsfsyppskvssass 94 
               +Y++++L a gl+ +       s +  +r +s      p+   +f+e+ee+++      t+e   ++++LFDl ne+L+  +  ++++ s+ +++v  ++ 
   Q0D9B8 756 MAYIKQVLIAVGLYEDGssysspSMMNNARVDS--MarrPICDYVFDEVEETYN------TEEDAADHRMLFDLANEALEITMMGSTKTGSSLWRWVVDSTG 849
              68***********86668887643333344444..1457**************6......6799***************99977667889999999877755 PP

  DUF4378  95 rrrpkklsgeelleevwseirswlspe...selvldelvdkdlssregkwl.dledeveeigleierlIledLve 165
                    + g++ll +vw++++s++ p+   + ++++++v+++  ++   w+  l+++++ +g+++er I+++L+ 
   Q0D9B8 850 V-----SPGRKLLVDVWQQVQSVRNPPvqqETQTVESMVAREAWTS--PWIeVLHEDSYVLGRKLERAIFDQLIA 917
              3.....5699************99999*****************99..***999*******************97 PP



Or compare Q0D9B8 to CDD or PaperBLAST