Q0I4C6 has 718 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6e-73 230.8 0.0 2.1e-70 222.5 0.0 2.3 2 Q0I4C6
Domain annotation for each sequence (and alignments):
>> Q0I4C6
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 222.5 0.0 2.1e-70 2.1e-70 1 196 [. 162 375 .. 162 376 .. 0.94
2 ! 6.1 0.0 0.00045 0.00045 79 164 .. 579 669 .. 551 688 .. 0.80
Alignments for each domain:
== domain 1 score: 222.5 bits; conditional E-value: 2.1e-70
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear....aelk..lygsD 83
RgyR+++g+apL+etLAaa+v ++ w++g+pl+DPmCGsGt+lIEaa+++a+iap+l+r ++++ +k+ea e a+ ++l ++g+D
Q0I4C6 162 RGYREDTGKAPLRETLAAAIVLRSSWEKGTPLVDPMCGSGTLLIEAAQMEAQIAPQLHRLHWGFdfwkghnqvvwekVKQEAVELAEqafnRKLTphFWGFD 263
9**************************************************************************9977766655554554444469***** PP
UPF0020 84 ldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkv 184
ld+rv+++a++Na++agv++li+++q d+a L+ +e+e++++++npPYGerlg+++al +LYs f+r+lk +++ ++v++++++ al ++l+ ra r++
Q0I4C6 264 LDHRVLKKAQKNAQNAGVSHLIKWQQGDVAGLKnPTEQEIGTVICNPPYGERLGTTPALIALYSVFGRQLKTEFAD--WNVSIFSGEPALLDCLRLRAYRQF 363
*********************************65666**************************************..************************ PP
UPF0020 185 keknvklglllk 196
k+kn++l++++k
Q0I4C6 364 KAKNGPLDCVQK 375
*********997 PP
== domain 2 score: 6.1 bits; conditional E-value: 0.00045
UPF0020 79 lygsDldrrvvqgareNaekagvgdl.iefsqadaak.LrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvl 164
+D+ + +++ a++N+ ++++ ++ qad + L++ + ++d+i +pP +r+++ ++++ + +++ lkr+lr++g +v+
Q0I4C6 579 TTTVDMSNTYLNWAEQNLLLNDIEGKqHKLIQADCLQwLNKCDRQFDLIFVDPPtfsNSKRMEDSWDVQRDHIKLMANLKRILRTNGTIVF 669
677999999999999999999998761567888876625577779*********53336899999999999999***********777665 PP
Or compare Q0I4C6 to CDD or PaperBLAST