R1CGJ7 has 1138 amino acids
Query: Met_synt_B12 [M=273]
Accession: PF02965.21
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-199 646.7 0.0 4.7e-111 356.6 0.0 2.2 2 R1CGJ7
Domain annotation for each sequence (and alignments):
>> R1CGJ7
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 287.9 0.0 4.4e-90 4.4e-90 50 261 .. 346 556 .. 336 560 .. 0.96
2 ! 356.6 0.0 4.7e-111 4.7e-111 14 273 .] 855 1118 .. 851 1118 .. 0.98
Alignments for each domain:
== domain 1 score: 287.9 bits; conditional E-value: 4.4e-90
Met_synt_B12 50 kiieekllkakavvglfpAnsegddievyadesrseelatlhtLrqqaekeegkpnlclaDfvapkesgvkDyiGlFavtaglgieelakefeaekd 146
+ +e ++a+avvg++pAn++gddievya + + ++ +lhtLrqq+e+ e++++l+l+Dfva kesgvkDy+G+Fav++g+g+ee++++++ae d
R1CGJ7 346 QTTEAFYVSARAVVGIWPANAVGDDIEVYAADGSGAVRGVLHTLRQQEER-EDDHYLALSDFVATKESGVKDYVGGFAVSCGFGCEEVCSKLRAEGD 441
555666789*********************9999999**********876.788******************************************* PP
Met_synt_B12 147 dYsailvkaladrLaeAfaellhekvrkelWgyakdeklsneelikekYqgiRpApGYpacpdhtekktlfelldaeekigieLteslamtPaasvs 243
dY+ i+++a+adrLaeAfaellh+k+rkelWgya+de+ls ++++k kYqgiRpApGYp++pdhtek+ l+elldae+++gi++t+s+am Paasvs
R1CGJ7 442 DYQGIMMEAVADRLAEAFAELLHHKMRKELWGYAPDEALSADDMLKVKYQGIRPAPGYPTQPDHTEKAFLWELLDAEKATGITMTDSFAMLPAASVS 538
************************************************************************************************* PP
Met_synt_B12 244 GlyfahpearyFavgkie 261
+++fa+p ++yF+vgk +
R1CGJ7 539 AVIFANPCSTYFQVGKYK 556
***************975 PP
== domain 2 score: 356.6 bits; conditional E-value: 4.7e-111
Met_synt_B12 14 ffqaWelkgky.....pkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpAnsegddievyadesrseelatlhtLrqqaekeegk 103
+++W+l+gky pki++de+vgeeakkl++d++a++++ii++k+lka+avvg++pAn++gddievya + + ++ +lhtLrqq+e+ e++
R1CGJ7 855 HYRVWQLRGKYpnrgyPKIFNDETVGEEAKKLHADGEALIADIIKNKTLKARAVVGIWPANAVGDDIEVYAADGSGAVRGVLHTLRQQEER-EDD 948
589*******999999*******************************************************9999999**********876.788 PP
Met_synt_B12 104 pnlclaDfvapkesgvkDyiGlFavtaglgieelakefeaekddYsailvkaladrLaeAfaellhekvrkelWgyakdeklsneelikekYqgi 198
++l+l+Dfva kesgvkDy+G+Fav++g+g+ee++++++ae ddY+ i+++a+adrLaeAfaellh+k+rkelWgya+de+ls ++++k kYqgi
R1CGJ7 949 HYLALSDFVATKESGVKDYVGGFAVSCGFGCEEVCSKLRAEGDDYQGIMMEAVADRLAEAFAELLHHKMRKELWGYAPDEALSADDMLKVKYQGI 1043
*********************************************************************************************** PP
Met_synt_B12 199 RpApGYpacpdhtekktlfelldaeekigieLteslamtPaasvsGlyfahpearyFavgkiekdqvedyakrkg 273
RpApGYp++pdhtek+ l+elldae+++gi++t+s+am Paasvs+++fa+p ++yF+vgk+ kdq++dya+rkg
R1CGJ7 1044 RPAPGYPTQPDHTEKAFLWELLDAEKATGITMTDSFAMLPAASVSAVIFANPCSTYFQVGKVCKDQITDYASRKG 1118
*************************************************************************97 PP
Or compare R1CGJ7 to CDD or PaperBLAST