REBASE::M.ApaHSI has 796 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-17 48.6 1.6 6.7e-17 47.9 0.0 2.1 2 REBASE::M.ApaHSI
Domain annotation for each sequence (and alignments):
>> REBASE::M.ApaHSI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.9 0.0 6.7e-17 6.7e-17 20 158 .. 328 505 .. 322 511 .. 0.83
2 ? -2.5 0.6 0.19 0.19 59 107 .. 657 705 .. 630 719 .. 0.58
Alignments for each domain:
== domain 1 score: 47.9 bits; conditional E-value: 6.7e-17
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..................................lkaeaeeear.... 74
+ ++ + ++ge + DP CGsG++lI a +++ + +re++ + + ++a
REBASE::M.ApaHSI 328 MTEIIDPQEGEIICDPTCGSGGFLIKAFEYVREKIEADIREQKEKlrsefesddfeskpedeqirvtvlidkmqavlnaE---LDTSATnsrm 417
7788899****************************999*99999999***************************995542...3333333334 PP
UPF0020 75 aelk...lygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrg 158
++l+ +yg D ++r+ ++++ N g g+ +++ e+ +dvi+tnpP+G+ +++ +++ + + + +e+k+ +r+
REBASE::M.ApaHSI 418 QQLSrncIYGTDANPRMARTSKMNMIMHGDGHGGVHHHDGLLNVNgIFEERFDVILTNPPFGQNVDRSQTITDADRFTDEEMKKKYRN 505
3333678*****************998887765555444555566655668********************99999999999998887 PP
== domain 2 score: -2.5 bits; conditional E-value: 0.19
UPF0020 59 refvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
++ +++++++++++++k ++ +++q+ ++ + + + + ++
REBASE::M.ApaHSI 657 KDDLKDARSRLKQAKKDKAKTSSINAEINAIQQEQTDNKTKKKEVEKTL 705
4444445556666666666655555555555555555555444444444 PP
Or compare REBASE::M.ApaHSI to CDD or PaperBLAST