REBASE::M.AspAMDI has 552 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-17 49.0 0.0 5.4e-17 48.2 0.0 1.3 1 REBASE::M.AspAMDI
Domain annotation for each sequence (and alignments):
>> REBASE::M.AspAMDI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.2 0.0 5.4e-17 5.4e-17 20 145 .. 201 338 .. 196 388 .. 0.79
Alignments for each domain:
== domain 1 score: 48.2 bits; conditional E-value: 5.4e-17
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeearaelk..lygsDldrrvvqgareNaeka 99
+ l + + g++++DP CGsG++l+ a + + +++ ++ + a + ++a+a l+ l+g D+d+ +v+ + N+
REBASE::M.AspAMDI 201 MADLVQPQMGHRIADPACGSGGFLLGAYQYIVTQLAIKAGTKGLTpdedgfvrtsVAASLTKKAQAILSssLWGYDIDATMVRLGLMNLMMH 292
667888999*****************99888877766665555449999*977775555555666444467********************* PP
UPF0020 100 gvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLY 145
g+++ i++++ ++ + +e+e+d++ +npP+ ++++ +e+L
REBASE::M.AspAMDI 293 GIDEpHIDYKDTLSKSYT-EESEYDIVMANPPFTGSIDKGDINENLR 338
**883699***9999999.888****************999999884 PP
Or compare REBASE::M.AspAMDI to CDD or PaperBLAST