REBASE::M.AteLMJI has 520 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-13 37.4 0.0 2.1e-13 36.5 0.0 1.3 1 REBASE::M.AteLMJI
Domain annotation for each sequence (and alignments):
>> REBASE::M.AteLMJI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.5 0.0 2.1e-13 2.1e-13 20 169 .. 182 334 .. 177 360 .. 0.78
Alignments for each domain:
== domain 1 score: 36.5 bits; conditional E-value: 2.1e-13
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.iefsqa 110
+v l+ ++++++ DP +G+ ++l+ a+ ++ +p +l + a+++ ++ + g D+d+ +++ + N gv++ ie+++
REBASE::M.AteLMJI 182 MVALTAPTPQDTICDPASGTCGFLVAAGEYLRRTYPDML-------RVPAQNAHFHNGMFHGYDFDNTMLRIGSMNMVLHGVEHPaIEYRDS 266
99*********************************9888.......4444555557777************************9549****9 PP
UPF0020 111 daakLrlkegevdvivtnpPYGerlgskkalekLYse.........flrelkrvlrgggrlvlltaen 169
a + + + +i++npP+ +l+ +++ ++L + fl + r l++ggr+++++++
REBASE::M.AteLMJI 267 LAEGAAGDAEAYSLILANPPFAGSLDYENTAKDLQQTvktkktellFLALFLRLLKTGGRAAVIVPDG 334
99999967779******************999998862222222223444555666666666666555 PP
Or compare REBASE::M.AteLMJI to CDD or PaperBLAST