REBASE::M.Ath12467II has 501 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5e-15 41.8 0.0 9.8e-15 40.9 0.0 1.4 1 REBASE::M.Ath12467II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Ath12467II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.9 0.0 9.8e-15 9.8e-15 18 139 .. 178 296 .. 174 316 .. 0.80
Alignments for each domain:
== domain 1 score: 40.9 bits; conditional E-value: 9.8e-15
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.i 105
a +v+l + + ++ + DP CG+ ++lIEa+ +++ el ++ + + ++ + g D+dr +++ a N + +++d i
REBASE::M.Ath12467II 178 AMMVELVKPTVNDFICDPACGTAGFLIEAGKYLNRVHE-------KELYDKGNIDHYHTTMFTGYDIDRTMLEIAAMNMMQHNIEDPnI 259
679***************************99988883.......2344555555557777************************9637 PP
UPF0020 106 efsqadaakLr...lkegevdvivtnpPYGerlgskk 139
++++ +++++ +i++npP+ +l++
REBASE::M.Ath12467II 260 NYRNGLTSPEDgveDEKDKYTIILANPPFKGSLDKDT 296
7777666543355366679**********99888765 PP
Or compare REBASE::M.Ath12467II to CDD or PaperBLAST