REBASE::M.BcaHPQLIII has 753 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-16 45.2 2.0 5e-16 45.1 0.1 2.0 2 REBASE::M.BcaHPQLIII
Domain annotation for each sequence (and alignments):
>> REBASE::M.BcaHPQLIII
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.1 0.1 5e-16 5e-16 18 138 .. 311 470 .. 306 478 .. 0.79
2 ? -3.1 0.2 0.28 0.28 50 67 .. 624 652 .. 612 678 .. 0.42
Alignments for each domain:
== domain 1 score: 45.1 bits; conditional E-value: 5e-16
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..................................lkaeaeee 72
+v++ + +++e++ DP CGsG++lI a ++ + ++++++ ++ +
REBASE::M.BcaHPQLIII 311 DFMVEVLDPQETETICDPCCGSGGFLIKAFEYVRAKIEAKVQQEKELikqeyytetyeklsdaekekiddrvnkffsqlneE---LNIN 396
5699999**********************9888888877776665557899************************9985541...3322 PP
UPF0020 73 ar....aelk...lygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgsk 138
+ ++l+ ++g D ++r+ ++a+ N g g+ + +++ e+ +dvi+tnpP+G r+++
REBASE::M.BcaHPQLIII 397 NDksriRTLSydcIFGTDANPRMSRTAKMNMIMHGDGHGGVHHNDGLLNVNgIFENRFDVILTNPPFGARVEKS 470
2233453333569*****************998887766555555566666655679*************9875 PP
== domain 2 score: -3.1 bits; conditional E-value: 0.28
UPF0020 50 ganiapgllrefvye...........lka 67
+ani ++l ++ + k+
REBASE::M.BcaHPQLIII 624 VANIQQKLAKKGKEAlpaeeekqlktEKK 652
33333222222222233333333222222 PP
Or compare REBASE::M.BcaHPQLIII to CDD or PaperBLAST