REBASE::M.Bpi12874III has 478 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-14 38.4 0.0 4e-09 22.5 0.0 2.3 2 REBASE::M.Bpi12874III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Bpi12874III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.5 0.0 4e-09 4e-09 3 56 .. 38 92 .. 36 163 .. 0.78
2 ! 13.8 0.0 1.9e-06 1.9e-06 84 137 .. 264 314 .. 224 332 .. 0.81
Alignments for each domain:
== domain 1 score: 22.5 bits; conditional E-value: 4e-09
UPF0020 3 yRvfngpapLketLAaalvrlagw.kdgepllDPmCGsGtilIEaallganiapg 56
y+ +pa + + +++ ++++ ++ + ++l+DP++GsGt+l+E+ l +++ g
REBASE::M.Bpi12874III 38 YTIHSYPAVMVPPISRNIINIVKQiMEVDSLFDPFSGSGTVLVEGMLANIKAVYG 92
66677889999999999999876515679****************9988887754 PP
== domain 2 score: 13.8 bits; conditional E-value: 1.9e-06
UPF0020 84 ldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgs 137
+ ++ v+++++N ++ +v+ + + ++ d ++ ++++d+++t pPYG++ ++
REBASE::M.Bpi12874III 264 KMHSFVEACKNNNSNSKVKIF-NNNVIDLFCIP--DSSIDLVITSPPYGDSRTT 314
567889999999999888654.44445665577..669***********98665 PP
Or compare REBASE::M.Bpi12874III to CDD or PaperBLAST