REBASE::M.Bst12778I has 501 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-16 46.2 0.0 6.2e-16 44.8 0.0 1.7 1 REBASE::M.Bst12778I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Bst12778I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.8 0.0 6.2e-16 6.2e-16 15 191 .. 191 365 .. 189 370 .. 0.78
Alignments for each domain:
== domain 1 score: 44.8 bits; conditional E-value: 6.2e-16
UPF0020 15 tLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgd 103
+L +a+v+l + k ge+++DP CG+G++l Ea + ++ a ++ e+++ ++k +yg ++ + + N+ g++
REBASE::M.Bst12778I 191 SLVRAMVKLLNPKIGETIYDPACGTGGFLAEAHYQMKDQA------------KTPEKRKVLNYKtFYGQEKTPLPFVLCLMNLTLHGMDY 268
5889**********************************99............3455556666666*******************999986 PP
UPF0020 104 l.iefs...qadaakLrlkegevdvivtnpPYGer....lgskkal..ekLYseflrelkrvlrgggrlvlltaenkalekaleeralrk 183
i+ q ++++++ ++++ dvi++npP+G + ++s+ + ++ fl+ ++++l+ +gr++++++e +++ ++ ++l+k
REBASE::M.Bst12778I 269 PrIAKGntlQRNIRDIE-DHEKRDVILANPPFGGKeqtmIQSNFPIesNATEILFLQHIEKMLKVNGRAAVIIPEGVLFQTNAAYMNLKK 357
42444411145566666.8889**********97622213333333213334458999**********************9999999999 PP
UPF0020 184 vkeknvkl 191
+ ++ +l
REBASE::M.Bst12778I 358 KLLEECNL 365
87777666 PP
Or compare REBASE::M.Bst12778I to CDD or PaperBLAST