REBASE::M.Cal14237III has 552 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-15 42.0 0.0 8.2e-15 41.1 0.0 1.4 1 REBASE::M.Cal14237III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cal14237III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.1 0.0 8.2e-15 8.2e-15 20 144 .. 219 355 .. 213 407 .. 0.77
Alignments for each domain:
== domain 1 score: 41.1 bits; conditional E-value: 8.2e-15
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeearaelk..lygsDldrrvvqga 92
l +l++ k g++++DP CG+G++l+ a + + +r++ + + + +++++ l+ +yg+D+d +v+ +
REBASE::M.Cal14237III 219 LAELTEPKLGHKIADPACGTGGFLLGAYQYILSDL---VRQKEPDllvadedgferasISSVLDKKNKQILNdsFYGFDIDTTMVRLG 303
67899********************9976544433...444444455679999988875555555555555567************** PP
UPF0020 93 reNaekagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekL 144
N+ g+++ ie+++ ++ + ++g++d++++npP+ +l++ + +L
REBASE::M.Cal14237III 304 LMNLMMHGIDNpHIEYKDSLSKNYN-ETGDYDIVLANPPFTGKLDKGDVNPDL 355
*********9835999*99999999.999***********9998887766655 PP
Or compare REBASE::M.Cal14237III to CDD or PaperBLAST