REBASE::M.Cam7243I has 531 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-14 39.2 0.0 5.8e-14 38.4 0.0 1.4 1 REBASE::M.Cam7243I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cam7243I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.4 0.0 5.8e-14 5.8e-14 20 190 .. 179 352 .. 173 358 .. 0.75
Alignments for each domain:
== domain 1 score: 38.4 bits; conditional E-value: 5.8e-14
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgdliefsq 109
+v+l + + e+++DP CG+ ++l+ a ++ + + + + + e++ l g D+d+ +v+ + N g + ++
REBASE::M.Cam7243I 179 MVELMRPSPSERIIDPACGTAGFLVNASEWIRDHH--------GDELMKKSVRDNFEAHgLTGYDFDSTMVRISAMNMFMHGFNSPNIAYR 261
999**********************9986666655........23233333334444445**********************998766666 PP
UPF0020 110 adaakLr.lkegevdvivtnpPYGerlgskkalekLYse.........flrelkrvlrgggrlvlltaenkalekaleeralrkvkeknvk 190
++ ++++++d+i++npP+ ++++ + ++L+s f +++ + lr ggr++++++e + + +++a+rk ++n k
REBASE::M.Cam7243I 262 DSLGTIPdEDKESFDLILANPPFAGSVDESNLDKELTSLgktkktellFINRFLSLLRIGGRAAVIVPEGVLFGSTKAHKAIRKELVENQK 352
677789989999***************9998888887632222233336677777777777777777777777777777777776666655 PP
Or compare REBASE::M.Cam7243I to CDD or PaperBLAST