REBASE::M.Cba16038III has 528 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.6e-14 38.2 0.0 1.5e-13 37.0 0.0 1.6 1 REBASE::M.Cba16038III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cba16038III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.0 0.0 1.5e-13 1.5e-13 18 188 .. 177 350 .. 172 358 .. 0.76
Alignments for each domain:
== domain 1 score: 37.0 bits; conditional E-value: 1.5e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdl 104
+ +v+l++ k+++++ DP CG+ ++l+ a+ +++ + ++a +++ ++ + g+++d+ +++ + N + g+++
REBASE::M.Cba16038III 177 RMMVELTQPKQDDTICDPSCGTAGFLVSAGEYIQSRHLDWF--------NNATFREHfHNNMFNGIEFDPTMLRIGAMNMQLHGLDNP 256
78****************************99999984333........333333333444599***********************9 PP
UPF0020 105 iefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLYse.........flrelkrvlrgggrlvlltaenkalekaleeralr 182
+ + + + e+ + +i++npP+ +l+ + +L + fl+ + r+l+ ggr+++++++ + + +++++r
REBASE::M.Cba16038III 257 TLIGKDALSEANaDIENAYSLILANPPFKGSLDYDEVESSLLKTtktkktellFLSLMLRMLKVGGRAAVIVPDGVLFGSSTAHKSIR 344
9998865555555456689*********999998777766665422222333367778888888888888888888888877777777 PP
UPF0020 183 kvkekn 188
k ++n
REBASE::M.Cba16038III 345 KELVEN 350
766666 PP
Or compare REBASE::M.Cba16038III to CDD or PaperBLAST