REBASE::M.Cco2909I has 499 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-14 39.5 0.0 4.5e-14 38.7 0.0 1.4 1 REBASE::M.Cco2909I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cco2909I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.7 0.0 4.5e-14 4.5e-14 18 140 .. 166 298 .. 161 354 .. 0.79
Alignments for each domain:
== domain 1 score: 38.7 bits; conditional E-value: 4.5e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilI...Eaallganiapgllrefvyelkaeaeeear.......aelklygsDldrrvvqgareNaek 98
+ +v+l + ++++ DP CG+ ++lI E l + +++ + ++ ++l +++ + ++ +yg+D+d+++v+ a N+
REBASE::M.Cco2909I 166 RMMVELMDPSSEDKICDPACGTAGFLIsslEYILEKYTRPESVFTDEEGNLYNKIGDMMTseewkyfKTEMFYGFDFDPSMVRIASMNLML 256
68************************955566677777776666666666444443333332244434555*******************9 PP
UPF0020 99 agvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskka 140
+++ +++q+d + r ++e+++ ++++npP+ ++++
REBASE::M.Cco2909I 257 HSIDNP-NVRQMDSLSKRyEEENKYTLVLANPPFKGSVDKGDI 298
999876.6777787777777888***********888877655 PP
Or compare REBASE::M.Cco2909I to CDD or PaperBLAST