REBASE::M.Cdi11397II has 469 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-14 38.4 0.0 1.3e-13 37.2 0.0 1.6 2 REBASE::M.Cdi11397II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cdi11397II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.9 0.0 0.52 0.52 140 158 .. 65 83 .. 62 94 .. 0.71
2 ! 37.2 0.0 1.3e-13 1.3e-13 19 173 .. 153 308 .. 149 327 .. 0.83
Alignments for each domain:
== domain 1 score: -3.9 bits; conditional E-value: 0.52
UPF0020 140 alekLYseflrelkrvlrg 158
+l+k+Y+ +lrel + +
REBASE::M.Cdi11397II 65 ELKKFYQDMLRELGEGSTS 83
5788999999998775555 PP
== domain 2 score: 37.2 bits; conditional E-value: 1.3e-13
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
++vrl + ++ge+ DP CG+ ++ I a +++ + ++ ++e++++ + g++l + + a Na +++ i +
REBASE::M.Cdi11397II 153 VMVRLIDPQPGERCNDPACGTFGFMIAASEYVRRNTDNHY------SLDGDRAEFQVKEAFTGVELVHDTHRLALMNAMLHNIEAPIYL 235
7*************************88888888773333......45556666777788***************************** PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkal.ekLY.......seflrelkrvlrgggrlvlltaenkale 173
+ L ++ + +dv++tnpP+G + g ++a ++L+ +fl+ + r l++ggr+++++++n +
REBASE::M.Cdi11397II 236 GD-TLSPLGKDLNGYDVVLTNPPFGTKRGGERATrDDLTfptsnkqLNFLQHIYRSLKRGGRAAVVLPDNVLFS 308
**.67779866668***********9988888887889743333223689999999999999999999988776 PP
Or compare REBASE::M.Cdi11397II to CDD or PaperBLAST