REBASE::M.Ces8809II has 499 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-14 40.4 0.0 2.6e-14 39.5 0.0 1.4 1 REBASE::M.Ces8809II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Ces8809II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.5 0.0 2.6e-14 2.6e-14 18 145 .. 166 303 .. 161 361 .. 0.73
Alignments for each domain:
== domain 1 score: 39.5 bits; conditional E-value: 2.6e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilI...Eaallganiapgllrefvye.............lkaeaeeear....aelklygsDldrr 87
+ +v+l + + ++++ DP CG+ ++lI E l + + + + + + + ++ +y++D+d++
REBASE::M.Ces8809II 166 RMMVELMNPTLEDKICDPACGTAGFLInslEYILEKYTKPESI------FtdeegnfhsrigdMMTSK----EweyfRTDMFYAFDFDPS 245
68************************93333344444444444......3344555777654322222....123335555********* PP
UPF0020 88 vvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLY 145
+v+ a N+ ++d +++q+da + r ++e+++ ++++npP+ ++++ + +L
REBASE::M.Ces8809II 246 MVRIASMNLMLHSIDDP-NVRQMDAMSKRyEEENKYTLVLANPPFKGSIDEGDINTTLV 303
**************997.6888899988888888**************99988877775 PP
Or compare REBASE::M.Ces8809II to CDD or PaperBLAST