REBASE::M.Cin379I has 670 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.4e-14 38.0 0.0 1.6e-10 27.1 0.0 2.5 2 REBASE::M.Cin379I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cin379I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.1 0.0 1.6e-10 1.6e-10 17 103 .. 331 427 .. 327 437 .. 0.74
2 ! 8.2 0.0 0.0001 0.0001 118 140 .. 472 494 .. 452 504 .. 0.83
Alignments for each domain:
== domain 1 score: 27.1 bits; conditional E-value: 1.6e-10
UPF0020 17 AaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye........lkaeaeeear..aelklygsDldrrvvqgareNaek 98
a+v++ + +++++ lDP CGsG++l+ +++ ++ +l ++++ e++e+ r ae +++g+D+d+ + ++ar N
REBASE::M.Cin379I 331 IKAMVEMMNPNENTRVLDPACGSGGFLVMVLDHVRKQIAEKLYPEITDevllaakyNTYEVNERVReyAENSIFGFDFDPDLKKAARMNMVM 422
579************************965555555554444444444888887554445555555545555*****************999 PP
UPF0020 99 agvgd 103
ag g+
REBASE::M.Cin379I 423 AGDGH 427
88665 PP
== domain 2 score: 8.2 bits; conditional E-value: 0.0001
UPF0020 118 kegevdvivtnpPYGerlgskka 140
++g++d+i tnpP+G +++ ++
REBASE::M.Cin379I 472 ARGKFDIIFTNPPFGAKVKVDED 494
5789***********99887665 PP
Or compare REBASE::M.Cin379I to CDD or PaperBLAST