REBASE::M.Cko10770I has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-13 37.0 0.0 3.2e-13 35.9 0.0 1.5 1 REBASE::M.Cko10770I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cko10770I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.9 0.0 3.2e-13 3.2e-13 18 171 .. 172 324 .. 168 345 .. 0.71
Alignments for each domain:
== domain 1 score: 35.9 bits; conditional E-value: 3.2e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+ +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ +++
REBASE::M.Cko10770I 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNNY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVKI 250
67999*********************77766666666...........2344445556777*******9888888888888888888887 PP
UPF0020 108 sqad..aakLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
+ + ++ L +++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++
REBASE::M.Cko10770I 251 RHDNtlNKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 324
7755115566677779***********65333111111113344555666777888888888888887776655 PP
Or compare REBASE::M.Cko10770I to CDD or PaperBLAST