REBASE::M.Cko11076I has 489 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-13 37.1 0.0 3e-13 36.0 0.0 1.5 1 REBASE::M.Cko11076I Domain annotation for each sequence (and alignments): >> REBASE::M.Cko11076I # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.0 0.0 3e-13 3e-13 18 171 .. 172 324 .. 168 345 .. 0.72 Alignments for each domain: == domain 1 score: 36.0 bits; conditional E-value: 3e-13 UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107 + +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ +++ REBASE::M.Cko11076I 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNNY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQI 250 67999*********************77766666666...........2344445556777*******9988899999999988888888 PP UPF0020 108 sqada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171 + + + L +++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++ REBASE::M.Cko11076I 251 RHDNTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 324 8766511556677779***********65333111111113344555666777888888888888887776655 PP
Or compare REBASE::M.Cko11076I to CDD or PaperBLAST