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Align REBASE::M.Cla13003I to PF01170 (UPF0020)

REBASE::M.Cla13003I has 475 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    9.1e-15   41.0   0.0    3.4e-14   39.1   0.0    1.9  2  REBASE::M.Cla13003I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Cla13003I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.4e-14   3.4e-14      18     138 ..     155     264 ..     151     269 .. 0.88
   2 ?   -1.9   0.0      0.13      0.13     148     188 ..     295     336 ..     293     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.4e-14
              UPF0020  18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                           a+v + + + g ++ DP CG+G++l+Ea    +              k++ + e+ ++  l g D+ + v+  +  N+    +g+  + 
  REBASE::M.Cla13003I 155 KAIVSVMKPQIGMSINDPACGTGGFLLEAYEYMRASS-----------KDKTKLENLKTKALSGTDISPLVTSLCAMNLYLHDIGGDESP 233
                          689999999*******************988777777...........6677777778888************************99999 PP

              UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgsk 138
                          ++     L l ++ +d+++tnpP+G++ ++k
  REBASE::M.Cla13003I 234 VKTSDSLLSLGDQRYDMVLTNPPFGKKSSTK 264
                          9988888999999*************98776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.13
              UPF0020 148 flrelkrvlrgggrlvlltaenkalekaleer.alrkvkekn 188
                          fl+ + +vl+ gg++++++++n  +e  ++e+ + r  k +n
  REBASE::M.Cla13003I 295 FLQHIMSVLKIGGKAAVVLPDNVLFEGGAGEKvRQRLLKDFN 336
                          889999999999**********99998888875555555555 PP



Or compare REBASE::M.Cla13003I to CDD or PaperBLAST