REBASE::M.Cma10206I has 562 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.8e-14 38.3 0.0 8.6e-13 34.5 0.0 2.5 2 REBASE::M.Cma10206I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cma10206I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.5 0.0 8.6e-13 8.6e-13 9 134 .. 21 129 .. 17 147 .. 0.81
2 ? -1.4 0.0 0.089 0.089 13 38 .. 462 487 .. 462 488 .. 0.94
Alignments for each domain:
== domain 1 score: 34.5 bits; conditional E-value: 8.6e-13
UPF0020 9 papLketLAaalvrlagwkd.gepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNae 97
p L e LA v +a++++ + +++DP CG G +l+ a + + + a g l lkl+g D+d+++v++ar ++
REBASE::M.Cma10206I 21 PPELAEFLANHVVAVADLDRsELTIIDPACGDGELLV-AVVHSLKSA-GYL----------------GILKLIGYDIDAAAVEQARARLH 92
5678999**********9762679************9.556666666.333................6899***************9999 PP
UPF0020 98 kagvgdliefsqadaakLrlkegevdvivtnpPYGer 134
+ + + ++ + + + +l++++vd+i+tnpPY +
REBASE::M.Cma10206I 93 NITRNAQVIQGDFLLHQRELPTHSVDIIITNPPYVRT 129
99888888777777666668899***********765 PP
== domain 2 score: -1.4 bits; conditional E-value: 0.089
UPF0020 13 ketLAaalvrlagwkdgepllDPmCG 38
+e +A+ ++ +a+ g + +D CG
REBASE::M.Cma10206I 462 NEDIAYLMLAVANSSLGVRYYDEVCG 487
689*******************9999 PP
Or compare REBASE::M.Cma10206I to CDD or PaperBLAST