REBASE::M.Cma14266I has 571 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-14 38.2 0.1 6.6e-13 34.9 0.1 2.3 2 REBASE::M.Cma14266I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cma14266I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.9 0.1 6.6e-13 6.6e-13 9 134 .. 21 129 .. 17 147 .. 0.81
2 ? -2.3 0.0 0.17 0.17 14 38 .. 463 487 .. 462 488 .. 0.92
Alignments for each domain:
== domain 1 score: 34.9 bits; conditional E-value: 6.6e-13
UPF0020 9 papLketLAaalvrlagw.kdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNae 97
p L e LA +v a++ +++ +++DP CG G +l+ a +++ lkl+g D+d+++v++ar ++
REBASE::M.Cma14266I 21 PPELAEFLADHIVAAADLdRPELTIIDPACGDGELLVAVARSLKDAG------------------YLGILKLIGYDIDAAAVEQARARLR 92
5678999**********935799*************98777666655..................225789******************9 PP
UPF0020 98 kagvgdliefsqadaakLrlkegevdvivtnpPYGer 134
+ + ++ + + + +l++++vd+i+tnpPY +
REBASE::M.Cma14266I 93 DVNRDAQVIQGDFLLHQRNLPTHSVDIIITNPPYVRT 129
99888888777766665557789***********765 PP
== domain 2 score: -2.3 bits; conditional E-value: 0.17
UPF0020 14 etLAaalvrlagwkdgepllDPmCG 38
e +A+ ++ +a+ g + +D CG
REBASE::M.Cma14266I 463 EDIAYLMLAVANSSLGVRYYDEVCG 487
689******************9999 PP
Or compare REBASE::M.Cma14266I to CDD or PaperBLAST