REBASE::M.CpaAII has 516 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.1e-15 41.1 0.0 1.5e-14 40.3 0.0 1.4 1 REBASE::M.CpaAII
Domain annotation for each sequence (and alignments):
>> REBASE::M.CpaAII
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.3 0.0 1.5e-14 1.5e-14 18 144 .. 183 319 .. 178 377 .. 0.78
Alignments for each domain:
== domain 1 score: 40.3 bits; conditional E-value: 1.5e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilI...Eaallganiapgllrefvyelkaeaeeear....aelk...lygsDldrrvvqgareNaekag 100
+ +v+l + +++++ DP CG+ ++lI E l + ++ + ++ +++++++ + ++ k +yg+D+d+++v+ a N+
REBASE::M.CpaAII 183 RMMVELMDPSAEDKICDPACGTAGFLInslEYILEKYTRSESVFTDEEGNIHNRIGDMMSpkdwDHFKkdmFYGFDFDASMVRIASMNLMLHS 275
68************************933344555555555555555555666666655565563333466********************** PP
UPF0020 101 vgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekL 144
++d +++q+d + r ++e+++ ++++npP+ +++++ + +L
REBASE::M.CpaAII 276 IDDP-NVRQMDSLSKRyEEENKYTLVLANPPFKGSIDKEDINPSL 319
*998.5677777777777888**************9998877666 PP
Or compare REBASE::M.CpaAII to CDD or PaperBLAST