REBASE::M.Cre11140II has 509 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-14 39.7 0.0 4.7e-14 38.6 0.0 1.5 1 REBASE::M.Cre11140II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cre11140II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.6 0.0 4.7e-14 4.7e-14 19 137 .. 173 283 .. 169 348 .. 0.77
Alignments for each domain:
== domain 1 score: 38.6 bits; conditional E-value: 4.7e-14
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+v+l + k++e+++DP CG+ ++l aa+ + p + ++ ++++++ l g+D+d+ +v+ a N g ++ +
REBASE::M.Cre11140II 173 MMVQLIRPKADEKIIDPACGTAGFL--AATSEYLKEPL-------KETTKTIRDNHYDHGLTGFDFDSTMVRIAAMNMVMHGYSNPNIA 252
59*******************9999..45444444431.......112233333445555************************99999 PP
UPF0020 108 sqadaakLr.lkegevdvivtnpPYGerlgs 137
+q ++L + + +dvi++npP+ ++++
REBASE::M.Cre11140II 253 YQDSLKELDhSQLEAFDVILANPPFAGSINQ 283
998999999644448**********999987 PP
Or compare REBASE::M.Cre11140II to CDD or PaperBLAST