REBASE::M.CsiBAA15III has 523 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-15 41.7 0.0 1.2e-14 40.6 0.0 1.5 1 REBASE::M.CsiBAA15III
Domain annotation for each sequence (and alignments):
>> REBASE::M.CsiBAA15III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.6 0.0 1.2e-14 1.2e-14 20 146 .. 170 289 .. 163 347 .. 0.72
Alignments for each domain:
== domain 1 score: 40.6 bits; conditional E-value: 1.2e-14
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdlie 106
lv l + ++ ++++DP CG+ ++l+ a +a+ r+ y++ ++ + +e l g+D+d+ +v+ a N g ++
REBASE::M.CsiBAA15III 170 LVALMEPTPSQRIIDPACGTAGFLVAANDWVAQHH----RKDLYNKDTRT----KfTEEGLTGFDFDKTMVRIAAMNMFMHGFEEPNI 249
89999********************7654444444....55555433322....2234449************************998 PP
UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerlgskkalekLYs 146
+kL+ k g++d++++npP+ +l++ kL s
REBASE::M.CsiBAA15III 250 SHHDSLQKLPTKFGDFDLVLANPPFAGSLDKDSIDPKLKS 289
88889********************999988765555444 PP
Or compare REBASE::M.CsiBAA15III to CDD or PaperBLAST