REBASE::M.Csp26I has 493 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-13 36.9 0.0 5.3e-13 35.2 0.0 1.8 1 REBASE::M.Csp26I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Csp26I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.2 0.0 5.3e-13 5.3e-13 18 179 .. 162 326 .. 158 340 .. 0.73
Alignments for each domain:
== domain 1 score: 35.2 bits; conditional E-value: 5.3e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
++vrl + k+ge+++DP G+G++l+ a + ++ a+ ++++ ++g++l + + a N+ g+++++ + +
REBASE::M.Csp26I 162 DCIVRLMKPKAGEVIQDPAAGTGGFLVAADHAIKAQT------DQLYSLTSAQSYFQRHNAFIGVELVPDTRRLALMNLMLHGIEGTVIQGDT 248
589***********************96654444444......444478899999999999****************************9999 PP
UPF0020 111 daakLrlkegevdvivtnpPYGerlgskkalekLYs..........eflrelkrvlrgggrlvlltaenkalekaleer 179
a + + ++ d+i+tnpP+G + g + ++ +s +f + + r l+ ggr+++++++n +e+ ++r
REBASE::M.Csp26I 249 LAGEGE-GLEQADLILTNPPFGTKKGGGRPSRADFSvtaetsnkqlAFVEHIIRALKPGGRAAVVLPDNVLFEDNTGKR 326
999777.44589**********876544332221110001111111566666777777777777777777777766665 PP
Or compare REBASE::M.Csp26I to CDD or PaperBLAST