REBASE::M.Cst69329I has 532 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-15 43.3 0.0 4.1e-15 42.1 0.0 1.6 1 REBASE::M.Cst69329I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cst69329I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.1 0.0 4.1e-15 4.1e-15 20 182 .. 179 343 .. 172 356 .. 0.72
Alignments for each domain:
== domain 1 score: 42.1 bits; conditional E-value: 4.1e-15
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear..aelk.lygsDldrrvvqgareNaekagvgdlie 106
lv l + +++++++DP CG+ ++l+ a a+ re y+ +++r + l g+D+d+ +v+ a N g ++
REBASE::M.Cst69329I 179 LVALMEPTPQQRIIDPACGTAGFLVAANDWIAHHH----REDLYN------KDTRttFITEgLTGFDFDKTMVRIAAMNMFMHGFEEPNI 258
89999********************7654444444....555554......33332123335**************************** PP
UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.........flrelkrvlrgggrlvlltaenkalekaleeralr 182
f+ ++L+ + g++d++++npP+ +l++ kL s f +++ + l+ ggr++++++e + + +++alr
REBASE::M.Cst69329I 259 FYHDSLQQLPTTFGDFDLVLANPPFAGSLDKDSIDPKLKSVttakkteilFVHRFLQLLKPGGRAAVIVPEGVLFGSTKAHKALR 343
**********9**************999988765555544311122222245555566666666666666666665555555555 PP
Or compare REBASE::M.Cst69329I to CDD or PaperBLAST