REBASE::M.Cur12011III has 524 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-14 38.5 0.0 9.8e-14 37.6 0.0 1.4 1 REBASE::M.Cur12011III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cur12011III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.6 0.0 9.8e-14 9.8e-14 20 170 .. 171 324 .. 164 347 .. 0.70
Alignments for each domain:
== domain 1 score: 37.6 bits; conditional E-value: 9.8e-14
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+v+l + + ++ +DP CG+ ++l+ a ++ + + ++ + ++ l g+D+d+++v+ a N g +d
REBASE::M.Cur12011III 171 MVELMRPAPKHRVIDPACGTAGFLVGAREWTRHHHADEF-------MDRRVSDWYTQRALTGFDFDSSMVRIAAMNMFMHGFEDPNIS 251
9999*********************76655555553222.......22222223344459************************8666 PP
UPF0020 108 sqadaakLr.lkegevdvivtnpPYGerlgskk...alekLYse......flrelkrvlrgggrlvlltaenk 170
+ ++++ ++++ +d+i++npP+ ++++ +l +L s+ fl ++ l+ ggr++++++e
REBASE::M.Cur12011III 252 YRDSLQQVPeADREAFDIILANPPFAGSIDESSldpELANLISSkrtellFLARFLTLLKPGGRAAVIVPEGV 324
666899999777779**************98751114444444322222344555555556666666655555 PP
Or compare REBASE::M.Cur12011III to CDD or PaperBLAST