REBASE::M.Dba7044IV has 555 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-14 39.9 0.0 3.3e-14 39.2 0.0 1.3 1 REBASE::M.Dba7044IV
Domain annotation for each sequence (and alignments):
>> REBASE::M.Dba7044IV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.2 0.0 3.3e-14 3.3e-14 24 162 .. 207 364 .. 200 376 .. 0.73
Alignments for each domain:
== domain 1 score: 39.2 bits; conditional E-value: 3.3e-14
UPF0020 24 agwkdgepllDPmCGsGtilIEaallganiapgllrefvye.........lkaeaeeear......aelk..lygsDldrrvvqgareNa 96
+ + g+++ DP CG+G++l+ a + + ++ + + + +++ + ++ l+g D+d+ +++ + N+
REBASE::M.Dba7044IV 207 VKPRLGNRIGDPACGTGGFLLGAYQYIVTDIARKSGN---QelkpdedgfVRTSVSAAYGqeskaiL--DksLFGYDIDSTMIRLGMMNL 291
56677999*************9987666555433333...3355899**955544444332222223..256****************** PP
UPF0020 97 ekagvgdl.iefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.......flrelkrvlrgggrl 162
g+++ ++++ + +++++ ++ +i +npP+ ++++ +e+L+ + f +++ r+lr+gg +
REBASE::M.Dba7044IV 292 MMHGIDEPlLDYKDTLSKGFNEPN-QYQIIMANPPFTGSIDKSDINEDLTLSttktellFVETMVRMLRKGGTA 364
*****986268999999****777.8********************9998652222222455666666666555 PP
Or compare REBASE::M.Dba7044IV to CDD or PaperBLAST