REBASE::M.DfaPA1I has 568 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-16 47.2 0.0 2e-16 46.4 0.0 1.3 1 REBASE::M.DfaPA1I
Domain annotation for each sequence (and alignments):
>> REBASE::M.DfaPA1I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.4 0.0 2e-16 2e-16 20 148 .. 215 355 .. 210 408 .. 0.74
Alignments for each domain:
== domain 1 score: 46.4 bits; conditional E-value: 2e-16
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsDldrrvvqgareNae 97
+ l + + g++++DP CG+G++l+ a + + + +++ + + a + ++++ l+ lyg D+d+ +v+ + N+
REBASE::M.DfaPA1I 215 MADLVRPQLGQRIVDPACGTGGFLLGAYQYIVTQLA--IKDGKQDlvpdedgfartsVAAGLTRKTQLILQesLYGYDIDATMVRLGLMNLM 304
667788999****************99887777664..44444446679999966664444444555333356******************* PP
UPF0020 98 kagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYsef 148
g+++ i++++ + + +e+++d++++npP+ ++++ +e+L ++
REBASE::M.DfaPA1I 305 MHGIDEpHIDYQDTLSKGYN-EEAKYDIVLANPPFTGSIDKGDINENLQLAT 355
****9835999999999999.888*****************99999997553 PP
Or compare REBASE::M.DfaPA1I to CDD or PaperBLAST