REBASE::M.Eco10957I has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-13 36.9 0.0 3.5e-13 35.8 0.0 1.6 1 REBASE::M.Eco10957I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco10957I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.8 0.0 3.5e-13 3.5e-13 18 171 .. 172 324 .. 168 345 .. 0.70
Alignments for each domain:
== domain 1 score: 35.8 bits; conditional E-value: 3.5e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+ +v + + k ge+++DP CG+G++l + ++ ++ + + ++ ++++ g+++++ a +N g++ +++
REBASE::M.Eco10957I 172 RFMVDRVDPKLGESIMDPACGTGGFLA---CAFDHVKNKF--------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQI 250
67999********************94...4445555222........2344445556778*******9988899999999988888888 PP
UPF0020 108 sqada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
+ + + L +++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++
REBASE::M.Eco10957I 251 RHDNTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 324
8766511556677779***********65333111111113344555666777888888888888887776655 PP
Or compare REBASE::M.Eco10957I to CDD or PaperBLAST