REBASE::M.Eco10974I has 493 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.9e-14 38.3 0.0 1.3e-13 37.2 0.0 1.5 1 REBASE::M.Eco10974I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco10974I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.2 0.0 1.3e-13 1.3e-13 18 171 .. 176 328 .. 172 349 .. 0.73
Alignments for each domain:
== domain 1 score: 37.2 bits; conditional E-value: 1.3e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+ +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ +++
REBASE::M.Eco10974I 176 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIHGVEKKQLPALLATTNMLLHGIEVPVQI 254
67999*********************76666666666...........2344445556777********999999999999999999999 PP
UPF0020 108 sqadaakLr..lkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
+ + + + +++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++
REBASE::M.Eco10974I 255 RHDNTLNQPlsSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 328
8877655443366779***********65333111111113344555666777888888888888887776655 PP
Or compare REBASE::M.Eco10974I to CDD or PaperBLAST