REBASE::M.Eco11022II has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-14 39.7 0.0 4.6e-14 38.7 0.0 1.5 1 REBASE::M.Eco11022II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco11022II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.7 0.0 4.6e-14 4.6e-14 18 171 .. 172 324 .. 168 345 .. 0.72
Alignments for each domain:
== domain 1 score: 38.7 bits; conditional E-value: 4.6e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
+ +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++yg+++++ a +N g++ ++
REBASE::M.Eco11022II 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIYGVEKKQLPHLLATTNMLLHGIEVPVQ 249
67999*********************76666666666...........2344445556778*******998889999999999888888 PP
UPF0020 107 fsqada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
++ + + L +++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++
REBASE::M.Eco11022II 250 IRHDNTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 324
88766511556677779***********65333111111113344555666777888888888888887776655 PP
Or compare REBASE::M.Eco11022II to CDD or PaperBLAST