REBASE::M.Eco644II has 501 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-14 39.0 0.0 7.9e-14 37.9 0.0 1.5 1 REBASE::M.Eco644II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco644II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.9 0.0 7.9e-14 7.9e-14 18 171 .. 184 336 .. 180 357 .. 0.72
Alignments for each domain:
== domain 1 score: 37.9 bits; conditional E-value: 7.9e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
+ +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ ++++
REBASE::M.Eco644II 184 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIR 263
67999*********************76666666666...........2344445556777*******99888899999888888888888 PP
UPF0020 109 qad..aakLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
+ ++ L ++++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++
REBASE::M.Eco644II 264 HDNtlNKPLSSRDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 336
766114566678889***********65333111111113344555666777888888888888887776655 PP
Or compare REBASE::M.Eco644II to CDD or PaperBLAST