REBASE::M.Eco9031II has 923 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.5e-21 60.6 0.1 9.7e-10 24.6 0.0 4.6 4 REBASE::M.Eco9031II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco9031II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.0 0.0 4.2e-07 4.2e-07 28 55 .. 77 104 .. 57 136 .. 0.81
2 ! 6.5 0.0 0.00034 0.00034 97 136 .. 246 288 .. 235 294 .. 0.69
3 ! 24.6 0.0 9.7e-10 9.7e-10 9 50 .. 514 555 .. 510 576 .. 0.89
4 ! 7.3 0.0 0.00019 0.00019 113 135 .. 728 750 .. 703 758 .. 0.85
Alignments for each domain:
== domain 1 score: 16.0 bits; conditional E-value: 4.2e-07
UPF0020 28 dgepllDPmCGsGtilIEaallganiap 55
+ge+ lDP+ GsGt ++Ea lg++++
REBASE::M.Eco9031II 77 RGETVLDPFGGSGTTALEAVKLGRKAIS 104
6899******************999885 PP
== domain 2 score: 6.5 bits; conditional E-value: 0.00034
UPF0020 97 ekagvgdliefsqadaakLr...lkegevdvivtnpPYGerlg 136
e+a+ +l +f + d++ + l++g d++vt pPYG++++
REBASE::M.Eco9031II 246 EAATRYGLSQFLCDDIRVISkekLPDGIADLVVTSPPYGNATD 288
45555555566666666665555567889**********9886 PP
== domain 3 score: 24.6 bits; conditional E-value: 9.7e-10
UPF0020 9 papLketLAaalvrlagwkdgepllDPmCGsGtilIEaallg 50
+++ ++LA +l++++g +g + lD +CGsGt l+E+ l g
REBASE::M.Eco9031II 514 KGKFYPQLAKSLLNISGFGPGATVLDLFCGSGTTLLEGYLNG 555
5677899******************************97765 PP
== domain 4 score: 7.3 bits; conditional E-value: 0.00019
UPF0020 113 akLrlkegevdvivtnpPYGerl 135
kL l++g+vd+++t pPYG +l
REBASE::M.Eco9031II 728 MKLGLESGSVDLVLTSPPYGTAL 750
56777899************976 PP
Or compare REBASE::M.Eco9031II to CDD or PaperBLAST