REBASE::M.Eco9043I has 554 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.6e-17 47.6 0.0 1.4e-16 46.9 0.0 1.3 1 REBASE::M.Eco9043I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco9043I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.9 0.0 1.4e-16 1.4e-16 20 168 .. 201 368 .. 195 394 .. 0.76
Alignments for each domain:
== domain 1 score: 46.9 bits; conditional E-value: 1.4e-16
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeear.aelk..lygsDldrrvvqgareNae 97
+ +l + + g++++DP CG+G++l+ a + + +++ ++ + a+ e+ + + + lyg D+d+ +v+ + N+
REBASE::M.Eco9043I 201 MAELVQPQLGHRIIDPACGTGGFLLGAYQYIVTQLAINAGTKNLVpdedgfirtsVAATFDEKRQfVL-QesLYGYDIDATMVRLGLMNLM 290
778889999*****************988777666555433333379999977776666666655533.247******************* PP
UPF0020 98 kagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.......flrelkrvlrgggrlvlltae 168
g+++ i++++ ++ + +e+ +d++++npP+ ++++ +e+L + f + + r l++gg +++++++
REBASE::M.Eco9043I 291 MHGIDEpNIDYQDTLSKSYN-EESAYDIVLANPPFTGSIDKGDINEALQLAttktellFVENIYRLLKKGGTACVIVPQ 368
****883699***9999999.7779****************99999997551122222455566677777777776665 PP
Or compare REBASE::M.Eco9043I to CDD or PaperBLAST