REBASE::M.Eco9083I has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-13 36.7 0.0 4.1e-13 35.6 0.0 1.5 1 REBASE::M.Eco9083I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco9083I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.6 0.0 4.1e-13 4.1e-13 18 171 .. 172 324 .. 168 345 .. 0.71
Alignments for each domain:
== domain 1 score: 35.6 bits; conditional E-value: 4.1e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
+ +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ ++++
REBASE::M.Eco9083I 172 RFMVDRIDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIR 251
6799999*******************76666666666...........2344445556777*******99888999999999988888888 PP
UPF0020 109 qada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
+ + L +++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++
REBASE::M.Eco9083I 252 HDNTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 324
766511556677779***********65333111111113344555666777888888888888887776655 PP
Or compare REBASE::M.Eco9083I to CDD or PaperBLAST