REBASE::M.Eco9094I has 490 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.6e-14 38.7 0.0 8.9e-14 37.7 0.0 1.5 1 REBASE::M.Eco9094I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco9094I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.7 0.0 8.9e-14 8.9e-14 18 134 .. 172 279 .. 168 340 .. 0.77
Alignments for each domain:
== domain 1 score: 37.7 bits; conditional E-value: 8.9e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
+ +v++ + k ge+++DP CG+G++l a +++ + ++ e ++ ++++yg+++++ + +N g++ ++++
REBASE::M.Eco9094I 172 RFMVNRIDPKLGESIMDPACGTGGFLACAFDHVKEHY-----------VNTTEDHKTLQQQIYGVEKKQLPHLLCTTNMLLHGIEVPVQIR 251
679***********************55544444444...........3556666667888********9999999999999999999998 PP
UPF0020 109 qada..akLrlkegevdvivtnpPYGer 134
+ + L +++ dvi+tnpP+G
REBASE::M.Eco9094I 252 HDNTlnKPLSSWDEQLDVIITNPPFGGT 279
866511456677779***********54 PP
Or compare REBASE::M.Eco9094I to CDD or PaperBLAST