PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.EcoA17I to PF06634 (DUF1156)

REBASE::M.EcoA17I has 945 amino acids

Query:       DUF1156  [M=73]
Accession:   PF06634.16
Description: Protein of unknown function (DUF1156)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    5.3e-21   60.9   0.0      2e-20   59.0   0.0    2.0  1  REBASE::M.EcoA17I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoA17I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0     2e-20     2e-20       2      51 ..      19      69 ..      18      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 2e-20
            DUF1156  2 lPldkinaesakEksirhgqhlstLhlwW.aRrPLaavRAvilaqLvpaps 51
                       +P++ki+ae+ kE++++hgq l +L+ +W +R+PL++ +A+il++L+pa  
  REBASE::M.EcoA17I 19 FPVQKISAETFKERMASHGQLLVSLGAFWkGRKPLILNKACILGSLLPATD 69
                       9************************************************43 PP



Or compare REBASE::M.EcoA17I to CDD or PaperBLAST