REBASE::M.EcoA36III has 554 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-16 46.7 0.0 2.6e-16 46.0 0.0 1.3 1 REBASE::M.EcoA36III
Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoA36III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.0 0.0 2.6e-16 2.6e-16 20 148 .. 201 341 .. 195 389 .. 0.79
Alignments for each domain:
== domain 1 score: 46.0 bits; conditional E-value: 2.6e-16
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeear.aelk..lygsDldrrvvqgareNa 96
+ +l + + g++++DP CG+G++l+ a + + +++ ++ + a+ e+ + + + lyg D+d+ +v+ + N+
REBASE::M.EcoA36III 201 MAELVQPQLGHRIIDPACGTGGFLLGAYQYIVTQLAINAGTKNLVpdedgfirtsVAATFDEKRQfVL-QesLYGYDIDATMVRLGLMNL 289
778889999*****************988777666555433333379999977776666666655533.247****************** PP
UPF0020 97 ekagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYsef 148
g+++ i++++ ++ + +e+ +d++++npP+ ++++ +e+L ++
REBASE::M.EcoA36III 290 MMHGIDEpNIDYQDTLSKSYN-EESAYDIVLANPPFTGSIDKGDINEALQLAT 341
*****883699***9999999.7779****************99999986554 PP
Or compare REBASE::M.EcoA36III to CDD or PaperBLAST