REBASE::M.EcoEI has 490 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-14 40.7 0.0 2.1e-14 39.8 0.0 1.5 1 REBASE::M.EcoEI
Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoEI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.8 0.0 2.1e-14 2.1e-14 18 134 .. 172 279 .. 168 340 .. 0.76
Alignments for each domain:
== domain 1 score: 39.8 bits; conditional E-value: 2.1e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqad 111
+ +v++ + k ge+++DP CG+G++l a +++ + ++ e ++ ++++yg+++++ + +N g++ ++++ +
REBASE::M.EcoEI 172 RFMVNRIDPKLGESIMDPACGTGGFLACAFDHVKDNY-----------VKTTEDHKTLQQQIYGVEKKQLPHLLCTTNMLLHGIEVPVQIRHDN 254
679***********************55544444444...........2344555557777********9999999999999999999998866 PP
UPF0020 112 a..akLrlkegevdvivtnpPYGer 134
+ L +++vdvivtnpP+G
REBASE::M.EcoEI 255 TlnKPLSSWDEQVDVIVTNPPFGGT 279
511456677779***********54 PP
Or compare REBASE::M.EcoEI to CDD or PaperBLAST