REBASE::M.GspJM1IV has 516 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-14 40.8 0.0 1.8e-14 40.0 0.0 1.3 1 REBASE::M.GspJM1IV
Domain annotation for each sequence (and alignments):
>> REBASE::M.GspJM1IV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.0 0.0 1.8e-14 1.8e-14 20 170 .. 179 352 .. 173 375 .. 0.72
Alignments for each domain:
== domain 1 score: 40.0 bits; conditional E-value: 1.8e-14
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..............lkaeaeeear....aelklygsDldrrvvqga 92
+ ++ + + ++++ DP CG+G++l+ a + + + + + ++++e + + +++ e ++yg+D d+ +v+ +
REBASE::M.GspJM1IV 179 MCEIIDPDWTDKICDPACGTGGFLVGAYQHVLTKY--TSPKEIIEdenglnrfrrfggdK---ISKQEVwdnlWEKSFYGFDVDQTMVRIG 264
6666778889***************9988777777..23333334578889999995542...44444443345666************** PP
UPF0020 93 reNaekagvgd.liefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYse.......flrelkrvlrgggrlvlltaenk 170
N+ g++ +ie + +k k+ge+ vi++npP+ r+++ ++ +kL fl +++++lr gg+++++++e
REBASE::M.GspJM1IV 265 LMNLMLHGIKVpQIENTDSLSKKYDkeYKDGEYSVILANPPFTGRIDKGGMSDKLKITgtnsellFLIRISKMLRPGGKAAVIIPEGV 352
*****99998734666666666666767788*******************99999532112222355666777777777777776655 PP
Or compare REBASE::M.GspJM1IV to CDD or PaperBLAST