REBASE::M.Hma11271I has 492 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-15 42.8 0.1 7.7e-15 41.2 0.0 1.8 2 REBASE::M.Hma11271I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Hma11271I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.2 0.0 7.7e-15 7.7e-15 16 135 .. 156 265 .. 153 282 .. 0.82
2 ? -2.6 0.0 0.2 0.2 148 179 .. 300 331 .. 291 346 .. 0.74
Alignments for each domain:
== domain 1 score: 41.2 bits; conditional E-value: 7.7e-15
UPF0020 16 LAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgd.. 103
L a+v++ + k++++ +DP CG+G++l+ a a a ++ e+++ ++ ++g D+ +vv+ + N+ g+g+
REBASE::M.Hma11271I 156 LIQAMVEVMQPKPTDVVADPACGTGGFLLAAHDYMAPQA---A--------SKPEKKFLRNDAFRGNDIVDSVVRLCAMNLYLHGIGGad 234
5689*************************8864444444...2........444555556667*********************999843 PP
UPF0020 104 .liefsqadaakLrlkegevdvivtnpPYGerl 135
i ++a a+++ e++vd++++npP+G++
REBASE::M.Hma11271I 235 cPILNQDALAKSVG--EDKVDIVLANPPFGKKS 265
35888888888888..668***********975 PP
== domain 2 score: -2.6 bits; conditional E-value: 0.2
UPF0020 148 flrelkrvlrgggrlvlltaenkalekaleer 179
f + ++++l+ +g++++++++n +e ++e
REBASE::M.Hma11271I 300 FVQHIANMLKVNGKAAVVLPDNVLFEGGAGET 331
77888899999999999999999998777665 PP
Or compare REBASE::M.Hma11271I to CDD or PaperBLAST