REBASE::M.KoxNIH5I has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-13 37.1 0.0 3e-13 36.0 0.0 1.5 1 REBASE::M.KoxNIH5I
Domain annotation for each sequence (and alignments):
>> REBASE::M.KoxNIH5I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.0 0.0 3e-13 3e-13 18 171 .. 172 324 .. 168 345 .. 0.72
Alignments for each domain:
== domain 1 score: 36.0 bits; conditional E-value: 3e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
+ +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ ++++
REBASE::M.KoxNIH5I 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNNY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIR 251
67999*********************77766666666...........2344445556777*******99888999999999888888888 PP
UPF0020 109 qada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
+ + L +++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++
REBASE::M.KoxNIH5I 252 HDNTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 324
766511556677779***********65333111111113344555666777888888888888887776655 PP
Or compare REBASE::M.KoxNIH5I to CDD or PaperBLAST