REBASE::M.Kpn10313I has 534 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-17 47.9 0.0 1.1e-16 47.2 0.0 1.3 1 REBASE::M.Kpn10313I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Kpn10313I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.2 0.0 1.1e-16 1.1e-16 20 168 .. 201 373 .. 196 399 .. 0.76
Alignments for each domain:
== domain 1 score: 47.2 bits; conditional E-value: 1.1e-16
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallgania..pgllrefvye.............lkaeaeeearaelk..lygsDldrrvvqga 92
+ l + + g++++DP CG+G++l+ a + + ++l++ ++ + a + ++ar l+ lyg D+d+ +v+ +
REBASE::M.Kpn10313I 201 MADLVQPQLGQRIADPACGTGGFLLGAYQYILTQLslSQNLKRDNSKgsthdedgffrtsVTAALTKKARILLQesLYGYDIDATMVRLG 290
667788899****************997654444300344444444479*******99998888888888555557************** PP
UPF0020 93 reNaekagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.......flrelkrvlrgggrlvlltae 168
N+ g+++ i++++ ++ +e ++d++++npP+ ++++ +e+L + f + + r l++gg +++++++
REBASE::M.Kpn10313I 291 LMNLMMHGIDEpHIDYQDTLSKSYS-EETKYDIVLANPPFTGSIDRGDINENLKLSttktellFVENIYRLLKKGGTACVIVPQ 373
*********9835999999999999.6669****************99999986441112222455666667777777776665 PP
Or compare REBASE::M.Kpn10313I to CDD or PaperBLAST