REBASE::M.Kpn39III has 490 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.8e-14 37.8 0.0 1.7e-13 36.8 0.0 1.4 1 REBASE::M.Kpn39III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Kpn39III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.8 0.0 1.7e-13 1.7e-13 18 134 .. 172 279 .. 168 340 .. 0.76
Alignments for each domain:
== domain 1 score: 36.8 bits; conditional E-value: 1.7e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
+ +v++ + k ge+++DP CG+G++l a +++ + ++ e ++ + ++yg+++++ + +N g++ ++++
REBASE::M.Kpn39III 172 RFMVNRIDPKLGESIMDPACGTGGFLACAFDHVKEHY-----------VNTTEDHKTLQKQIYGVEKKQLPHLLCTTNMLLHGIEVPVQIR 251
679***********************55544444444...........2445555556667********9999999999999999999998 PP
UPF0020 109 qadaakLr..lkegevdvivtnpPYGer 134
+ + + +++ dvi+tnpP+G
REBASE::M.Kpn39III 252 HDNTLNKPlaSWDEQLDVIITNPPFGGT 279
866554443367779***********54 PP
Or compare REBASE::M.Kpn39III to CDD or PaperBLAST