REBASE::M.Mmu11497I has 469 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.4e-15 40.9 0.0 1.9e-14 39.9 0.0 1.4 1 REBASE::M.Mmu11497I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Mmu11497I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.9 0.0 1.9e-14 1.9e-14 19 174 .. 153 309 .. 149 329 .. 0.84
Alignments for each domain:
== domain 1 score: 39.9 bits; conditional E-value: 1.9e-14
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
++vrl++ ++ge DP CG+ ++ I a +++ +++ +++ e++++ + + g++l + + a Na ++ i++
REBASE::M.Mmu11497I 153 VMVRLTKPQPGELCNDPACGTFGFMIAAFDYVREHT------DKFFDLNQDEAHFEIQKAFTGVELVHDTHRLALMNAMLHSIEAPITLG 236
7*************************8777777777......455677788888888888****************************** PP
UPF0020 109 qadaakLrlkegevdvivtnpPYGerlgskkal.ekLY.......seflrelkrvlrgggrlvlltaenkalek 174
+ L + +++dv++tnpP+G + g ++a ++L+ +fl+ + r l++ggr+++++++n +++
REBASE::M.Mmu11497I 237 D-TLSPLGKHLKNFDVVLTNPPFGTKKGGERATrDDLTfptsnkqLNFLQHIYRSLKSGGRAAVVLPDNVLFAD 309
*.67778866668**************99999988897433332236899999999999****99999988865 PP
Or compare REBASE::M.Mmu11497I to CDD or PaperBLAST