REBASE::M.Pal408II has 554 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-16 46.4 0.0 3.4e-16 45.6 0.0 1.3 1 REBASE::M.Pal408II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pal408II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.6 0.0 3.4e-16 3.4e-16 20 144 .. 201 337 .. 196 368 .. 0.82
Alignments for each domain:
== domain 1 score: 45.6 bits; conditional E-value: 3.4e-16
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeearaelk..lygsDldrrvvqgareNaek 98
+ l + + g++++DP CG+G++l+ a + + + +++ ++ + a ++ +a l+ lyg D+d+ +v+ + N+
REBASE::M.Pal408II 201 MADLVRPQLGHKIADPACGTGGFLLGAYQYVVTQLAINAGTQNLApdedgflrtsVAAAFDAKRQAILQetLYGYDIDSTMVRLGLMNLMM 291
6677888999*****************99988888666654444489999965553333344444555577******************** PP
UPF0020 99 agvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekL 144
g+++ i++++ ++ + +e+e+d++ +npP+ ++++ +e+L
REBASE::M.Pal408II 292 HGIDEpHIDYKDTLSKSYN-QEAEYDIVMANPPFTGSIDKGDINENL 337
***9835999999999999.999***************999988887 PP
Or compare REBASE::M.Pal408II to CDD or PaperBLAST