REBASE::M.PdeF0105I has 473 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-14 39.3 0.0 6.4e-14 38.2 0.0 1.5 1 REBASE::M.PdeF0105I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PdeF0105I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.2 0.0 6.4e-14 6.4e-14 19 178 .. 161 318 .. 156 335 .. 0.73
Alignments for each domain:
== domain 1 score: 38.2 bits; conditional E-value: 6.4e-14
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie.f 107
+v + k ge+ DP CG+G++l+ a ++ +++ ++e+ ++ l g+D+ + vv+ a N+ g+g + +
REBASE::M.PdeF0105I 161 TMVDCIKPKIGETVCDPACGTGGFLLAAYDCMKQQS-----------QNKDKREFLNNKALHGVDNTPLVVTLASMNLYLHGIGTDRSpI 239
6888999999***************97654333333...........23334444466779**********************8665514 PP
UPF0020 108 sqadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYse.......flrelkrvlrgggrlvlltaenkalekalee 178
+ d L+ +++ vdvi++npP+G r ++ ++Y e fl+ + +l+++gr+++++++n +e ++e
REBASE::M.PdeF0105I 240 ACEDS--LEkEPDTLVDVILANPPFGTRPAGSVDInrPDFYVEtknnqlnFLQHMMLMLKTSGRAAVILPDNVLFEGGAGE 318
44444..55458889************965555443668887533333347888888999999999999999888866655 PP
Or compare REBASE::M.PdeF0105I to CDD or PaperBLAST